From 3f4a0d5370ae6c34afe180df96add3b8522f4af1 Mon Sep 17 00:00:00 2001 From: mattkae Date: Wed, 11 May 2022 09:23:58 -0400 Subject: initial commit --- elpa/org-9.5.2/ob-octave.el | 264 ++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 264 insertions(+) create mode 100644 elpa/org-9.5.2/ob-octave.el (limited to 'elpa/org-9.5.2/ob-octave.el') diff --git a/elpa/org-9.5.2/ob-octave.el b/elpa/org-9.5.2/ob-octave.el new file mode 100644 index 0000000..bfe3e2a --- /dev/null +++ b/elpa/org-9.5.2/ob-octave.el @@ -0,0 +1,264 @@ +;;; ob-octave.el --- Babel Functions for Octave and Matlab -*- lexical-binding: t; -*- + +;; Copyright (C) 2010-2021 Free Software Foundation, Inc. + +;; Author: Dan Davison +;; Keywords: literate programming, reproducible research +;; Homepage: https://orgmode.org + +;; This file is part of GNU Emacs. + +;; GNU Emacs is free software: you can redistribute it and/or modify +;; it under the terms of the GNU General Public License as published by +;; the Free Software Foundation, either version 3 of the License, or +;; (at your option) any later version. + +;; GNU Emacs is distributed in the hope that it will be useful, +;; but WITHOUT ANY WARRANTY; without even the implied warranty of +;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;; GNU General Public License for more details. + +;; You should have received a copy of the GNU General Public License +;; along with GNU Emacs. If not, see . + +;;; Commentary: + +;;; Requirements: + +;; octave +;; octave-mode.el and octave-inf.el come with GNU emacs + +;;; Code: +(require 'ob) +(require 'org-macs) + +(declare-function matlab-shell "ext:matlab-mode") +(declare-function matlab-shell-run-region "ext:matlab-mode") + +(defvar org-babel-default-header-args:matlab '()) +(defvar org-babel-default-header-args:octave '()) + +(defvar org-babel-matlab-shell-command "matlab -nosplash" + "Shell command to run matlab as an external process.") +(defvar org-babel-octave-shell-command "octave -q" + "Shell command to run octave as an external process.") + +(defvar org-babel-matlab-with-emacs-link nil + "If non-nil use matlab-shell-run-region for session evaluation. +This will use EmacsLink if (matlab-with-emacs-link) evaluates +to a non-nil value.") + +(defvar org-babel-matlab-emacs-link-wrapper-method + "%s +if ischar(ans), fid = fopen('%s', 'w'); fprintf(fid, '%%s\\n', ans); fclose(fid); +else, save -ascii %s ans +end +delete('%s') +") +(defvar org-babel-octave-wrapper-method + "%s +if ischar(ans), fid = fopen('%s', 'w'); fprintf(fid, '%%s\\n', ans); fclose(fid); +else, dlmwrite('%s', ans, '\\t') +end") + +(defvar org-babel-octave-eoe-indicator "'org_babel_eoe'") + +(defvar org-babel-octave-eoe-output "ans = org_babel_eoe") + +(defun org-babel-execute:matlab (body params) + "Execute a block of matlab code with Babel." + (org-babel-execute:octave body params 'matlab)) + +(defun org-babel-execute:octave (body params &optional matlabp) + "Execute a block of octave code with Babel." + (let* ((session + (funcall (intern (format "org-babel-%s-initiate-session" + (if matlabp "matlab" "octave"))) + (cdr (assq :session params)) params)) + (result-type (cdr (assq :result-type params))) + (full-body + (org-babel-expand-body:generic + body params (org-babel-variable-assignments:octave params))) + (gfx-file (ignore-errors (org-babel-graphical-output-file params))) + (result (org-babel-octave-evaluate + session + (if gfx-file + (mapconcat 'identity + (list + "set (0, \"defaultfigurevisible\", \"off\");" + full-body + (format "print -dpng %s" gfx-file)) + "\n") + full-body) + result-type matlabp))) + (if gfx-file + nil + (org-babel-reassemble-table + result + (org-babel-pick-name + (cdr (assq :colname-names params)) (cdr (assq :colnames params))) + (org-babel-pick-name + (cdr (assq :rowname-names params)) (cdr (assq :rownames params))))))) + +(defun org-babel-prep-session:matlab (session params) + "Prepare SESSION according to PARAMS." + (org-babel-prep-session:octave session params 'matlab)) + +(defun org-babel-variable-assignments:octave (params) + "Return list of octave statements assigning the block's variables." + (mapcar + (lambda (pair) + (format "%s=%s;" + (car pair) + (org-babel-octave-var-to-octave (cdr pair)))) + (org-babel--get-vars params))) + +(defalias 'org-babel-variable-assignments:matlab + 'org-babel-variable-assignments:octave) + +(defun org-babel-octave-var-to-octave (var) + "Convert an emacs-lisp value into an octave variable. +Converts an emacs-lisp variable into a string of octave code +specifying a variable of the same value." + (if (listp var) + (concat "[" (mapconcat #'org-babel-octave-var-to-octave var + (if (listp (car var)) "; " ",")) "]") + (cond + ((stringp var) + (format "'%s'" var)) + (t + (format "%s" var))))) + +(defun org-babel-prep-session:octave (session params &optional matlabp) + "Prepare SESSION according to the header arguments specified in PARAMS." + (let* ((session (org-babel-octave-initiate-session session params matlabp)) + (var-lines (org-babel-variable-assignments:octave params))) + (org-babel-comint-in-buffer session + (mapc (lambda (var) + (end-of-line 1) (insert var) (comint-send-input nil t) + (org-babel-comint-wait-for-output session)) + var-lines)) + session)) + +(defun org-babel-matlab-initiate-session (&optional session params) + "Create a matlab inferior process buffer. +If there is not a current inferior-process-buffer in SESSION then +create. Return the initialized session." + (org-babel-octave-initiate-session session params 'matlab)) + +(defun org-babel-octave-initiate-session (&optional session _params matlabp) + "Create an octave inferior process buffer. +If there is not a current inferior-process-buffer in SESSION then +create. Return the initialized session." + (if matlabp (require 'matlab) (or (require 'octave-inf nil 'noerror) + (require 'octave))) + (unless (string= session "none") + (let ((session (or session + (if matlabp "*Inferior Matlab*" "*Inferior Octave*")))) + (if (org-babel-comint-buffer-livep session) session + (save-window-excursion + (if matlabp (unless org-babel-matlab-with-emacs-link (matlab-shell)) + (run-octave)) + (rename-buffer (if (bufferp session) (buffer-name session) + (if (stringp session) session (buffer-name)))) + (current-buffer)))))) + +(defun org-babel-octave-evaluate + (session body result-type &optional matlabp) + "Pass BODY to the octave process in SESSION. +If RESULT-TYPE equals `output' then return the outputs of the +statements in BODY, if RESULT-TYPE equals `value' then return the +value of the last statement in BODY, as elisp." + (if session + (org-babel-octave-evaluate-session session body result-type matlabp) + (org-babel-octave-evaluate-external-process body result-type matlabp))) + +(defun org-babel-octave-evaluate-external-process (body result-type matlabp) + "Evaluate BODY in an external octave process." + (let ((cmd (if matlabp + org-babel-matlab-shell-command + org-babel-octave-shell-command))) + (pcase result-type + (`output (org-babel-eval cmd body)) + (`value (let ((tmp-file (org-babel-temp-file "octave-"))) + (org-babel-eval + cmd + (format org-babel-octave-wrapper-method body + (org-babel-process-file-name tmp-file 'noquote) + (org-babel-process-file-name tmp-file 'noquote))) + (org-babel-octave-import-elisp-from-file tmp-file)))))) + +(defun org-babel-octave-evaluate-session + (session body result-type &optional matlabp) + "Evaluate BODY in SESSION." + (let* ((tmp-file (org-babel-temp-file (if matlabp "matlab-" "octave-"))) + (wait-file (org-babel-temp-file "matlab-emacs-link-wait-signal-")) + (full-body + (pcase result-type + (`output + (mapconcat + #'org-babel-chomp + (list body org-babel-octave-eoe-indicator) "\n")) + (`value + (if (and matlabp org-babel-matlab-with-emacs-link) + (concat + (format org-babel-matlab-emacs-link-wrapper-method + body + (org-babel-process-file-name tmp-file 'noquote) + (org-babel-process-file-name tmp-file 'noquote) wait-file) "\n") + (mapconcat + #'org-babel-chomp + (list (format org-babel-octave-wrapper-method + body + (org-babel-process-file-name tmp-file 'noquote) + (org-babel-process-file-name tmp-file 'noquote)) + org-babel-octave-eoe-indicator) "\n"))))) + (raw (if (and matlabp org-babel-matlab-with-emacs-link) + (save-window-excursion + (with-temp-buffer + (insert full-body) + (write-region "" 'ignored wait-file nil nil nil 'excl) + (matlab-shell-run-region (point-min) (point-max)) + (message "Waiting for Matlab Emacs Link") + (while (file-exists-p wait-file) (sit-for 0.01)) + "")) ;; matlab-shell-run-region doesn't seem to + ;; make *matlab* buffer contents easily + ;; available, so :results output currently + ;; won't work + (org-babel-comint-with-output + (session + (if matlabp + org-babel-octave-eoe-indicator + org-babel-octave-eoe-output) + t full-body) + (insert full-body) (comint-send-input nil t)))) + results) + (pcase result-type + (`value + (org-babel-octave-import-elisp-from-file tmp-file)) + (`output + (setq results + (if matlabp + (cdr (reverse (delq "" (mapcar #'org-strip-quotes + (mapcar #'org-trim raw))))) + (cdr (member org-babel-octave-eoe-output + (reverse (mapcar #'org-strip-quotes + (mapcar #'org-trim raw))))))) + (mapconcat #'identity (reverse results) "\n"))))) + +(defun org-babel-octave-import-elisp-from-file (file-name) + "Import data from FILE-NAME. +This removes initial blank and comment lines and then calls +`org-babel-import-elisp-from-file'." + (let ((temp-file (org-babel-temp-file "octave-matlab-")) beg end) + (with-temp-file temp-file + (insert-file-contents file-name) + (re-search-forward "^[ \t]*[^# \t]" nil t) + (when (< (setq beg (point-min)) + (setq end (point-at-bol))) + (delete-region beg end))) + (org-babel-import-elisp-from-file temp-file '(16)))) + +(provide 'ob-octave) + +;;; ob-octave.el ends here -- cgit v1.2.1